PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G143700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HD-ZIP
Protein Properties Length: 835aa    MW: 92158.1 Da    PI: 5.964
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G143700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.4e-183491457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++++eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aqcoe1G143700.2.p 34 YVRYSSEQVEALERVYAECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 91
                       6789****************************************************97 PP

2START151.47.8e-481713762203
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +ae++++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++   +++l+d++ W +++++ e+  v   g  g +
  Aqcoe1G143700.2.p 171 IAEDTLAEFISKATGTAVDWVQMPGMKPGPDSMGIVAISHGCSGVAARACGLVSLEPM-KIADILKDRLSWFHDCRSLEVFTVFPAGngGSV 261
                        78999*****************************************************.9999999999***************99999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++l+p Rdf+++Ry+  l +g++v++++S++     p+   + ++vRae lpSg+l++p+++g s +++v+h dl+++++++
  Aqcoe1G143700.2.p 262 ELIYTQMYAPTTLAPaRDFWTLRYTTVLDDGSLVVCERSLSGSGAGPNasaTTQFVRAEILPSGYLVRPCEGG-SIIHIVDHLDLEAYSVPE 352
                        *****************************************999999889999*******************9.****************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXX CS
              START 180 llrslvksglaegaktwvatlqrq 203
                        ++r+l++s+   ++k++ ++l++ 
  Aqcoe1G143700.2.p 353 VVRPLYQSSKYIAQKMTISALRYI 376
                        ****************99999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6612892IPR001356Homeobox domain
SuperFamilySSF466892.4E-162994IPR009057Homeodomain-like
SMARTSM003891.2E-153096IPR001356Homeobox domain
CDDcd000862.33E-163393No hitNo description
PfamPF000468.9E-163491IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-183591IPR009057Homeodomain-like
CDDcd146862.36E-585123No hitNo description
PROSITE profilePS5084826.931161388IPR002913START domain
SMARTSM002347.0E-40170379IPR002913START domain
SuperFamilySSF559618.38E-33170381No hitNo description
PfamPF018521.3E-45171377IPR002913START domain
Gene3DG3DSA:3.30.530.203.5E-19171355IPR023393START-like domain
SuperFamilySSF559611.65E-6402493No hitNo description
SuperFamilySSF559611.65E-6524593No hitNo description
PfamPF086703.1E-51691833IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MAMNNNVESS SSGSFNRQQQ QQLQQQQDDG SGKYVRYSSE QVEALERVYA ECPKPSSMRR  60
QQLIRECPIL SNIEPKQIKV WFQNRRCREK QRKEACRLQT VNRKLSAMNK LLIEENDRLQ  120
KQVTHLVCEN GFMRQQLHNP SATTDASCDS VVTTPQPPLK DENNPAGLFS IAEDTLAEFI  180
SKATGTAVDW VQMPGMKPGP DSMGIVAISH GCSGVAARAC GLVSLEPMKI ADILKDRLSW  240
FHDCRSLEVF TVFPAGNGGS VELIYTQMYA PTTLAPARDF WTLRYTTVLD DGSLVVCERS  300
LSGSGAGPNA SATTQFVRAE ILPSGYLVRP CEGGSIIHIV DHLDLEAYSV PEVVRPLYQS  360
SKYIAQKMTI SALRYIRQIA QETSGEVVYN FGRQPAVLRT FSQRLNRGFN DAVNGFSDDG  420
WSLINCGGSE DVTIAVNTMK NPLLGGVLCV KASMLLQNVP PALLVRFLRE HRSEWADYNI  480
DAYSAASVKS GTHAFPGLRP TRFSGNQIIM PLGHTVEHEE MLEVIRLEGH ALTEEDAVIS  540
RDIHLLQICS GIDENAVGAC SELVFAPIDE MFPEDVPLLP SGFRIIPLES KSDALISQQT  600
LDLTSSLEVT AAPTRAAEET SSVTYNTRSV LTIAFQFPFE HHLQDTIASM GLQYVRNVIC  660
SVQRVATAIA PSGMSPHIGL KLSPGSPEAV TLAQWICQSY SHHFRTELLR PHNEGGDSVL  720
KMLWHHPDAI LCCSMKSLPV FTFANQAGLD MLETTLVALQ DITLDKIFDE AGRKAMYTDF  780
AKIMQQGCAC VPAGTCMSTM GRHVSYEQVV AWKVLGEENN VHCIAFAFIN WSFM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264677.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
RefseqXP_010264678.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
RefseqXP_010264679.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLI1LL540.0I1LL54_SOYBN; Uncharacterized protein
STRINGGLYMA11G20520.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein